Package: classyfireR 0.3.8

classyfireR: R Interface to the 'ClassyFire' REST API

Access to the 'ClassyFire' REST API <http://classyfire.wishartlab.com>. Retrieve existing entity classifications and submit new entities for classification.

Authors:Tom Wilson [aut, cre], Jasen Finch [aut], Gordon Getzinger [ctb], Florian Schmidt [ctb]

classyfireR_0.3.8.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
classyfireR/json (API)

# Install 'classyfireR' in R:

install.packages('classyfireR', repos = c('https://wilsontom.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aberhrml/classyfirer/issues

On CRAN:

chemont classifiation database inchi-key metabolomics ontology

5.12 score 15 stars 44 scripts 58 downloads 13 exports 40 dependencies

Last updated from:ac8c9204f4. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	151
source / vignettes	OK	178
linux-release-x86_64	NOTE	137
macos-release-arm64	NOTE	106
macos-oldrel-arm64	NOTE	103
windows-devel	NOTE	81
windows-release	NOTE	93
windows-oldrel	NOTE	225
wasm-release	OK	121

Exports:alternative_parents chebi classification description descriptors direct_parent get_classification get_query meta open_cache show submit_query unclassified

Dependencies:askpass assertthat bit bit64 blob cachem cli clisymbols cpp11 crayon curl DBI dplyr fastmap generics glue httr jsonlite lifecycle magrittr memoise mime openssl pillar pkgconfig purrr R6 rjson rlang RSQLite stringi stringr sys tibble tidyjson tidyr tidyselect utf8 vctrs withr

Getting Stated with classyfireR

Rendered fromGetting-Started.Rmdusingknitr::rmarkdown

Last update: 2022-02-17
Started: 2022-02-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
alternative_parents	alternative_parents alternative_parents,ClassyFire-method alternative_parents,Query-method
chebi	chebi chebi,ClassyFire-method chebi,Query-method
Accessor Methods for the ClassyFire S4 class	classification classification,ClassyFire-method classification,Query-method
ClassyFire Class	ClassyFire-class
description	description description,ClassyFire-method description,Query-method
descriptors	descriptors descriptors,ClassyFire-method descriptors,Query-method
direct_parent	direct_parent direct_parent,ClassyFire-method direct_parent,Query-method
Get Entity Classification	get_classification
Retrieves the classification results for a given query.	get_query
meta	meta meta,ClassyFire-method meta,Query-method
Open Cache	open_cache
ClassyFire Query Class	Query-class
show-ClassyFire	show,ClassyFire-method show,Query-method
Submits a ClassyFire query in a JSON format.	submit_query
unclassified	unclassified unclassified,Query-method