classyfireR - R Interface to the 'ClassyFire' REST API
Access to the 'ClassyFire' REST API <http://classyfire.wishartlab.com>. Retrieve existing entity classifications and submit new entities for classification.
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chemontclassifiationdatabaseinchi-keymetabolomicsontology
5.08 score 14 stars 43 scripts 55 downloadsclassyfireR - R Interface to the 'ClassyFire' REST API
Access to the 'ClassyFire' REST API <http://classyfire.wishartlab.com>. Retrieve existing entity classifications and submit new entities for classification.
Last updated
chemontclassifiationdatabaseinchi-keymetabolomicsontology
5.08 score 14 stars 43 scripts 53 downloadsforestControl - Approximate False Positive Rate Control in Selection Frequency for Random Forest
Approximate false positive rate control in selection frequency for random forest using the methods described by Ender Konukoglu and Melanie Ganz (2014) <arXiv:1410.2838>. Methods for calculating the selection frequency threshold at false positive rates and selection frequency false positive rate feature selection.
Last updated
randomforestcpp
5.08 score 2 stars 2 dependents 7 scripts 199 downloadsforestControl - Approximate False Positive Rate Control in Selection Frequency for Random Forest
Approximate false positive rate control in selection frequency for random forest using the methods described by Ender Konukoglu and Melanie Ganz (2014) <arXiv:1410.2838>. Methods for calculating the selection frequency threshold at false positive rates and selection frequency false positive rate feature selection.
Last updated
randomforestcpp
4.08 score 2 stars 2 dependents 7 scripts 154 downloadsmetabolighteR - Interface to the 'Metabolights' REST API
Access to the 'Metabolights' REST API <https://www.ebi.ac.uk/metabolights/index>. Retrieve elements of publicly available 'Metabolights' studies.
Last updated
repositorydatametabolomicsmassspectrometrydatametabolightsmetabolights-studiesopen-datarest-api
4.00 score 11 stars 18 scripts 13 downloadsmetabolighteR - Interface to the 'Metabolights' REST API
Access to the 'Metabolights' REST API <https://www.ebi.ac.uk/metabolights/index>. Retrieve elements of publicly available 'Metabolights' studies.
Last updated
repositorydatametabolomicsmassspectrometrydatametabolightsmetabolights-studiesopen-datarest-api
4.00 score 11 stars 18 scripts 11 downloadsmsconverteR - Convert vendor specific mass spectrometry files to mzML
Use the pwiz docker container to convert vendor specific mass spectrometry files to .mzML from within the R console on Linux systems.
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dockermass-spectrometrymzmlpwiz
3.95 score 12 stars 1 dependents 6 scriptsgaml2r - Parse GAML Files
Open and parse data from a Generalized Analytical Markup Language (GAML) files.
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gamlhplcxml
2.78 score 1 stars 1 dependents 1 scriptssRm - Toolkit for SRM-MS data (MS) data
A complete toolkit for working with Selective Reaction Monitoring (SRM) Mass Spectrometry (MS) data and other variants of targeted Liquid Chromatography (LC) MS data.
Last updated
lcmsmass-spectrometrymetabolomicsquantificationsrm-mstriple-quadrupole
2.48 score 3 starsslurmwiz - Convert Raw Mass Spectrometry Files
Wrapper for converting raw mass spectrometry data files using the pwiz docker container through apptainer on a high performance computer (HPC) cluster running SLRUM workload manager.
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mass-spectrometrymsconvertmzmlsingularityslurmslurm-workload-manager
2.40 score 2 scriptsmicturate - Tools for urine samples
Simple tools for helping with various aspects of urinary analysis.
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urine
2.18 score 1 scriptsq3ML - Open and Parse SRM mzML Files from Thermo Triple Quadrupole Instruments
Parses selective reaction monitoring (SRM) mzML chromatograms exported from Thermo triple quadrupole instruments. The package is intended as a fallback for newer ProteoWizard-generated mzML files where chromatogram data cannot be decoded through 'mzR', while preserving output structures that are easy to compare with 'mzR' headers and chromatograms.
Last updated
mass-spectrometrymrm-msmzmlmzrsrm-msxml2
2.00 score 3 scripts