{
  "_id": "6ab250583d719c1f8408ba48",
  "Package": "classyfireR",
  "Type": "Package",
  "Title": "R Interface to the 'ClassyFire' REST API",
  "Version": "0.3.8",
  "Date": "2022-02-20",
  "Authors@R": "c(\nperson(\"Tom\", \"Wilson\", , \"tpw2@aber.ac.uk\", c(\"aut\", \"cre\"),  comment = c(ORCID = \"0000-0003-3112-4682\")),\nperson(\"Jasen\", \"Finch\", , \"jsf9@aber.ac.uk\", \"aut\"),\nperson(\"Gordon\", \"Getzinger\", ,\"gordon.getzinger@duke.edu\", \"ctb\"),\nperson(\"Florian\", \"Schmidt\",,\"florianxschmidt@web.de\", \"ctb\"))",
  "Description": "Access to the 'ClassyFire' REST API\n<http://classyfire.wishartlab.com>. Retrieve existing entity\nclassifications and submit new entities for classification.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "URL": "https://github.com/aberHRML/classyfireR",
  "BugReports": "https://github.com/aberHRML/classyfireR/issues",
  "RoxygenNote": "7.1.2",
  "Roxygen": "list(markdown = TRUE)",
  "Collate": "'allGenerics.R' 'allClasses.R' 'accessor-methods.R'\n'get_classification.R' 'internals.R' 'query.R' 'show-method.R'\n'zzz.R'",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libicu-dev libssl-dev",
  "Repository": "https://wilsontom.r-universe.dev",
  "Date/Publication": "2022-02-20 19:49:11 UTC",
  "RemoteUrl": "https://github.com/wilsontom/classyfireR",
  "RemoteRef": "HEAD",
  "RemoteSha": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-22 09:50:56 UTC",
    "User": "root"
  },
  "Author": "Tom Wilson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3112-4682>),\nJasen Finch [aut],\nGordon Getzinger [ctb],\nFlorian Schmidt [ctb]",
  "Maintainer": "Tom Wilson <tpw2@aber.ac.uk>",
  "_user": "wilsontom",
  "_type": "src",
  "_file": "classyfireR_0.3.8.tar.gz",
  "_fileid": "https://r2.ropensci.org/5c49c1054d0e1a328b194a3c6481c712f8f2444ac7e550297d0a89e038aa42f1",
  "_filesize": 221133,
  "_sha256": "5c49c1054d0e1a328b194a3c6481c712f8f2444ac7e550297d0a89e038aa42f1",
  "_expires": "2026-12-31T09:54:30.000Z",
  "_created": "2026-09-22T09:50:56.000Z",
  "_published": "2026-09-22T09:54:32.095Z",
  "_jobs": [
    {
      "job": 106696920608,
      "time": 166,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "10687640310"
    },
    {
      "job": 106696920752,
      "time": 143,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10687730119"
    },
    {
      "job": 106696920684,
      "time": 101,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "10687325667"
    },
    {
      "job": 106696920670,
      "time": 114,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10688330336"
    },
    {
      "job": 106695650941,
      "time": 247,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10686579914"
    },
    {
      "job": 106696920742,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10687064801"
    },
    {
      "job": 106696921248,
      "time": 106,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "10688215369"
    },
    {
      "job": 106696921147,
      "time": 83,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "10688210315"
    },
    {
      "job": 106696921051,
      "time": 84,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10687465398"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229",
  "_status": "success",
  "_upstream": "https://github.com/wilsontom/classyfireR",
  "_commit": {
    "id": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
    "author": "wilsontom <wilsontom89@gmail.com>",
    "committer": "wilsontom <wilsontom89@gmail.com>",
    "message": "update pkgdown site\n",
    "time": 1645386551
  },
  "_maintainer": {
    "name": "Tom Wilson",
    "email": "tpw2@aber.ac.uk",
    "login": "wilsontom",
    "linkedin": "in/thomas-wilson-58ab98331",
    "orcid": "0000-0003-3112-4682",
    "description": "Researcher @ Department of Life Sciences, Aberystwyth University UK.  \n\nHigh resolution mass spectrometry, metabolomics & bioinformatics",
    "uuid": 5216870
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "magrittr",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "crayon",
      "role": "Imports"
    },
    {
      "package": "clisymbols",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rjson",
      "role": "Imports"
    },
    {
      "package": "RSQLite",
      "role": "Imports"
    },
    {
      "package": "tidyjson",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "stringi",
      "role": "Suggests"
    }
  ],
  "_owner": "wilsontom",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "chemont",
    "classifiation",
    "database",
    "inchi-key",
    "metabolomics",
    "ontology"
  ],
  "_stars": 15,
  "_contributors": [
    {
      "user": "wilsontom",
      "count": 319,
      "uuid": 5216870
    },
    {
      "user": "jasenfinch",
      "count": 11,
      "uuid": 3043780
    },
    {
      "user": "flow191",
      "count": 2,
      "uuid": 79848862
    },
    {
      "user": "gjgetzinger",
      "count": 2,
      "uuid": 16693333
    },
    {
      "user": "stanstrup",
      "count": 1,
      "uuid": 4532682
    }
  ],
  "_userbio": {
    "uuid": 5216870,
    "type": "user",
    "name": "Tom Wilson",
    "followers": 42,
    "description": "Researcher @ Department of Life Sciences, Aberystwyth University UK.  \r\n\r\nHigh resolution mass spectrometry, metabolomics & bioinformatics"
  },
  "_downloads": {
    "count": 48,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/classyfireR"
  },
  "_devurl": "https://github.com/aberhrml/classyfirer",
  "_searchresults": 42,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/classyfireR.html",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2018-10-14"
    },
    {
      "version": "0.1.2",
      "date": "2018-12-06"
    },
    {
      "version": "0.2.0",
      "date": "2019-02-25"
    },
    {
      "version": "0.2.1",
      "date": "2019-06-28"
    },
    {
      "version": "0.2.2",
      "date": "2019-08-08"
    },
    {
      "version": "0.3.0",
      "date": "2019-11-18"
    },
    {
      "version": "0.3.3",
      "date": "2020-02-18"
    },
    {
      "version": "0.3.6",
      "date": "2020-12-17"
    },
    {
      "version": "0.3.8",
      "date": "2022-02-22"
    }
  ],
  "_exports": [
    "alternative_parents",
    "chebi",
    "classification",
    "description",
    "descriptors",
    "direct_parent",
    "get_classification",
    "get_query",
    "meta",
    "open_cache",
    "show",
    "submit_query",
    "unclassified"
  ],
  "_help": [
    {
      "page": "alternative_parents",
      "title": "alternative_parents",
      "topics": [
        "alternative_parents",
        "alternative_parents,ClassyFire-method",
        "alternative_parents,Query-method"
      ]
    },
    {
      "page": "chebi",
      "title": "chebi",
      "topics": [
        "chebi",
        "chebi,ClassyFire-method",
        "chebi,Query-method"
      ]
    },
    {
      "page": "classification",
      "title": "Accessor Methods for the ClassyFire S4 class",
      "topics": [
        "classification",
        "classification,ClassyFire-method",
        "classification,Query-method"
      ]
    },
    {
      "page": "ClassyFire-class",
      "title": "ClassyFire Class",
      "topics": [
        "ClassyFire-class"
      ]
    },
    {
      "page": "description",
      "title": "description",
      "topics": [
        "description",
        "description,ClassyFire-method",
        "description,Query-method"
      ]
    },
    {
      "page": "descriptors",
      "title": "descriptors",
      "topics": [
        "descriptors",
        "descriptors,ClassyFire-method",
        "descriptors,Query-method"
      ]
    },
    {
      "page": "direct_parent",
      "title": "direct_parent",
      "topics": [
        "direct_parent",
        "direct_parent,ClassyFire-method",
        "direct_parent,Query-method"
      ]
    },
    {
      "page": "get_classification",
      "title": "Get Entity Classification",
      "topics": [
        "get_classification"
      ]
    },
    {
      "page": "get_query",
      "title": "Retrieves the classification results for a given query.",
      "topics": [
        "get_query"
      ]
    },
    {
      "page": "meta",
      "title": "meta",
      "topics": [
        "meta",
        "meta,ClassyFire-method",
        "meta,Query-method"
      ]
    },
    {
      "page": "open_cache",
      "title": "Open Cache",
      "topics": [
        "open_cache"
      ]
    },
    {
      "page": "Query-class",
      "title": "ClassyFire Query Class",
      "topics": [
        "Query-class"
      ]
    },
    {
      "page": "show",
      "title": "show-ClassyFire",
      "topics": [
        "show,ClassyFire-method",
        "show,Query-method"
      ]
    },
    {
      "page": "submit_query",
      "title": "Submits a ClassyFire query in a JSON format.",
      "topics": [
        "submit_query"
      ]
    },
    {
      "page": "unclassified",
      "title": "unclassified",
      "topics": [
        "unclassified",
        "unclassified,Query-method"
      ]
    }
  ],
  "_readme": "https://github.com/wilsontom/classyfireR/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "assertthat",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "clisymbols",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dplyr",
    "fastmap",
    "generics",
    "glue",
    "httr",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rjson",
    "rlang",
    "RSQLite",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyjson",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "Getting-Started.Rmd",
      "filename": "Getting-Started.html",
      "title": "Getting Stated with classyfireR",
      "author": "Thomas Wilson",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Retrieving Classifications",
        "Submit Multiple Queries",
        "Accessor Methods",
        "Working with a local cache",
        "Acknowledgements"
      ],
      "created": "2022-02-17 18:03:39",
      "modified": "2022-02-17 23:44:49",
      "commits": 2
    }
  ],
  "_score": 5.1003705451175625,
  "_indexed": true,
  "_nocasepkg": "classyfirer",
  "_universes": [
    "wilsontom",
    "aberhrml"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.8",
      "date": "2026-09-22T09:53:36.000Z",
      "distro": "resolute",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/6b3470238a83da04d60e932f3f0bed07ea2be8a3dae043165e9432cc7fd92a65",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.3.8",
      "date": "2026-09-22T09:53:14.000Z",
      "distro": "resolute",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/bcc080c1bb3acbd968a163587cbdbd61750918327220d27c50a35027e63ee5ab",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.8",
      "date": "2026-09-22T09:52:42.000Z",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/8078a1e2e5a967340dd990602b850d1e02eb097e9ed94c7142e7dcb51a5db6fb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.3.8",
      "date": "2026-09-22T09:52:45.000Z",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/7d0a48ebb31cb310b480daa8bb60d02ee0ab78487272152b7e1794d019556304",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.8",
      "date": "2026-09-22T09:53:12.000Z",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/1cbb48d92530dba9722b733a8510fec01b2029c2c32f522eee7ae2602cfc92b5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.8",
      "date": "2026-09-22T09:52:25.000Z",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/3d8c71cac7d0f3af703ed73d25917bf2bec605fe999abb910be5517756560a31",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.8",
      "date": "2026-09-22T09:52:12.000Z",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/0632234e2785026fd9f3261cfc92ba158e5331ab0ab9947dabf617f1133f59bb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.3.8",
      "date": "2026-09-22T09:52:12.000Z",
      "commit": "ac8c9204f40a0a74276f02994bc1ad14cd160496",
      "fileid": "https://r2.ropensci.org/bb9be8013b4545afa7b7592ddf612c14a4e003f0fc005641cc29fd15f3529646",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/wilsontom/actions/runs/35712307229"
    }
  ]
}