| Title: | Parse Xcalibur Sequence (.sld) Files |
|---|---|
| Description: | Simple parser for Thermo Scientific Xcalibur Sequence Files. |
| Authors: | Tom Wilson [aut, cre] |
| Maintainer: | Tom Wilson <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 0.1.0 |
| Built: | 2026-09-20 09:52:29 UTC |
| Source: | https://github.com/wilsontom/openSLD |
Extract sequence records and associated metadata from legacy and JSON-based
Thermo Scientific Xcalibur sequence list (.sld) files.
parse_thermo_sld(path)parse_thermo_sld(path)
path |
A length-one character string giving the path to an SLD file. |
A data frame with one row per sequence entry and the columns
row, raw_file, sequence_name, rack, vial, method_path,
data_path, batch, block, class, injOrder, sampleOrder,
display_label, json_offset, and strings_before_json. User-defined
fields that are absent from the file are returned as NA.
path <- system.file("extdata", "example-sequence.sld", package = "openSLD") sequence <- parse_thermo_sld(path) head(sequence)path <- system.file("extdata", "example-sequence.sld", package = "openSLD") sequence <- parse_thermo_sld(path) head(sequence)