Package 'micturate'

Correction Factor

Description

Calculate the normalisation correction factor

Usage

correction_factor(x, norm_value = 1.006)

Arguments

x	a numeric vector of refractive index values
norm_value	a numeric value specifying the target value to normalise to

Value

a numeric vector of correction factors

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96 Well Plate Map for Total Creatinine Assay

Description

96 Well Plate Map for Total Creatinine Assay

Usage

creatinine_plate_index

Format

A tbl_df

WELL

well position

NAME

sample name

CLASS

sample class

CONC

concentration

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Normalisation Volumes

Description

Calculate the required volumes based on normalisation correction factors

Usage

normalisation_volumes(x, total_volume = 500)

Arguments

x	a numeric vector of correction factors
total_volume	a numeric value specifying the total required volume (urine + water)

Value

a tbl_df of required urine and water volumes

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Urine Pooling Sheet

Description

Urine Pooling Sheet

Usage

pooling_sheet(ri_data, norm_value, volume)

Arguments

ri_data	a tbl_df of sample_name, value and group
norm_value	a numeric value to normalise to
volume	a numeric value for the total volume per sample

Value

a tbl_df of pooling volumes for each sample_name

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Predict RI values from HPLC-RI

Description

Predict RI values from HPLC-RI

Usage

refractive_index_prediction(gaml_file, standards)

Arguments

gaml_file	a GAML file containing HPLC-RI data.
standards	a two column tbl_df of external calibration standards. Columns must be named sample_name and specific_gravity. sample_name should use the format S01, S02, S03, etc... If NULL then a set of package calibration standards will be used instead.

Value

a tbl_df of predicted refractive index values

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Urine Sample Adjustments

Description

Urine Sample Adjustments

Usage

sampel_adjustments(ri_data, norm_value, volume)

Arguments

ri_data	a tbl_df of sample_name, value
norm_value	a numeric value to normalise to
volume	a numeric value for the total volume per sample

Value

a tbl_df of pooling volumes for each sample_name

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96 Well Plate Map for Total Urea Assay

Description

96 Well Plate Map for Total Urea Assay

Usage

urea_plate_index

Format

A tbl_df

WELL

well position

NAME

sample name

CLASS

sample class

CONC

concentration

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